PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0018000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 254aa    MW: 27264.8 Da    PI: 5.7535
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0018000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.1e-1086134354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        +++  rE+ RRd++N++f eL + l +    +  K +Ka+iL  A++ + +L
  ORGLA08G0018000.1  86 TSKASREKIRRDKMNDRFLELGTTLEPG---KPVKSDKAAILSDATHMVIQL 134
                        67889**********************9...99************9988776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-1278149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.13183134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.94E-884137No hitNo description
PfamPF000102.7E-787134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-1287157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-889140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146860.00163150181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSGTPADGGG GGGGGGGGGS GDDWFLDCGI LEDLPAAACG AFPWDASPSC SNPSVEVSSY  60
VNTTSYVLKE PGSNKRVRSG SCGRPTSKAS REKIRRDKMN DRFLELGTTL EPGKPVKSDK  120
AAILSDATHM VIQLRAEAKQ LKDTNESLED KIKELKAEKD ELRDEKQKLK VEKETLEQQV  180
KILTATPAYM PHPTLMPAPY PQAPLAPFHH AQGQAAGQKL MMPFVGYPGY PMWQFMPPSE  240
VDTSKDSEAC PPVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029510.0AK102951.1 Oryza sativa Japonica Group cDNA clone:J033115D14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649810.11e-174PREDICTED: transcription factor ILR3
SwissprotQ9FH375e-70ILR3_ARATH; Transcription factor ILR3
TrEMBLI1QFH90.0I1QFH9_ORYGL; Uncharacterized protein
STRINGORGLA08G0018000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20233885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.13e-71bHLH family protein